donderdag 26 januari 2012

On Elsevier

Consider signing a pledge agaist publishing or reviewing in Elsevier's journals due to their lack of scientific integrity (see below). Journals that would be affected include TiCS, Neuron, Cognition, Neuroimage, Vision Research, and more (see elsevier.com/neuroscience, elsevier.com/psychology).

 
 

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per Michael Nielsen autorius Michael Nielsen 12.1.25

Elsevier is the world's largest and most profitable scientific publisher, making a profit of 1.1 billion dollars on revenue of 3.2 billion dollars in 2009. Elsevier have also been involved in many dubious practices, including the publishing of fake medical journals sponsored by pharmaceutical companies, and the publication of what are most kindly described as extraordinarily shoddy journals. Until 2009, parent company Reed Elsevier helped facilitate the international arms trade. (This is just a tiny sample: for more, see Gowers's blog post, or look at some of the links on this page.) For this, executives at Reed Elsevier are paid multi-million dollar salaries (see, e.g., 1 and 2, and links therein).

All this is pretty widely known in the scientific community. However, Tim Gowers recently started a large-scale discussion of Elsevier by scientists, by blogging to explain that he will no longer be submitting papers to Elsevier journals, refereeing for Elsevier, or otherwise supporting the company in any way. The post now has more than 120 comments, with many mathematicians and scientists voicing similar concerns.

Following up from the discussion on Gowers's post, Tyler Neylon has created a website called The Cost of Knowledge (see also Gowers's followup) where researchers can declare their unwillingness to "support any Elsevier journal unless they radically change how they operate". If you're a mathematician or scientist who is unhappy with Elsevier's practices, then consider signing the declaration. And while you're at it, consider making your scientific papers open access, either by depositing them into open repositories such as the arXiv, or by submitting them to open access journals such as the Public Library of Science. Or do both.


 
 

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Bayesian priors and the simplicity/likelihood debate

Tom's *provocative* post on Simplicity / Likelihood debate.

 
 

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per Simplicity/Likelihood autorius Tom 12.1.25

Perhaps we can discuss a paradigm that I have been using to empirically measure the subjective priors involved in perceptual decisions. The results might help us to answer some of the questions addressed by Lee.

Some background:

The visual system is continually challenged to form accurate judgements based on noisy measurements of a perceptual environment. During the last decades, this challenge has often been formulated as a Bayesian inference problem. To maximize the accuracy of perceptual judgements, a Bayesian observer combines limited or unreliable sensory information with prior experience and knowledge of the perceptual environment. Formally, a Bayesian observer estimating a specific stimulus quantity, s, can be defined by two probability functions: the likelihood and prior function. The likelihood function, p(m|s), captures the probability of s underlying an observed set of noisy sensory measurements, m. The prior function, p(s), reflects the prior probability of the stimulus quantity s occurring in the natural environment or perceptual task at hand. The estimate of s corresponds to the mean or mode of the posterior distribution, p(s|m), which equals the (normalized) product of likelihood and prior functions. Note that we assume a continuous stimulus dimension here.

Measuring the prior:

Assuming human observers use Bayesian inference, the prior probability function can be estimated by measuring the perception of a specific stimulus quantity (spatial frequency, orientation, curvature, symmetry axis orientation, distance between the eyes, object aspect ratio, …) while varying the amount of visual information (by varying stimulus visibility through changes in contrast, presentation time, contour colinearity, phase scrambling, …). As the amount of visual information is reduced, a Bayesian observer will rely more on its prior probability function to estimate the stimulus quantity and, consequently, display a perceptual bias towards stimulus values favored by the prior. Formally, reducing amount of visual information by, e.g., lowering contrast broadens the likelihood function. Consequently, the likelihood function receives less weight in the posterior, which will mainly reflect the shape of the prior. Perceptual judgements based on posterior mean or mode will be biased towards the mean or mode of the prior.

Results:

Stocker and Simoncelli (2006) measured the perceived speed of a drifting grating as a function of grating contrast in a 2-AFC speed discrimination experiment. At low contrasts, observers not only respond more variably but also significantly underestimate the speed of the drifting grating. Such a contrast-induced bias is predicted by the Bayesian observer model when assuming a prior favouring low speeds.  A prior favouring low speeds may be well matched to the statistics of motion in natural scenes as most objects in our environment are either stationary or moving at slow speeds. It should be noted that obtaining/implementing a subjective prior matching the objective prior may not be straightforward in the case of motion, as one may need to discount self-motion (including eye-movements).

A stimulus domain for which the statistics of natural scenes are very well defined and objectively measured is spatial frequency. Natural scenes have a highly-consistent 1/f spatial frequency amplitude spectrum: as spatial frequency increases, power decreases proportionally (Burton and Moorhead, 1987; Field, 1987; Ruderman and Bialek, 1994; Simoncelli and Olshausen, 2001; Tolhurst et al., 1992). The 1/f spatial frequency spectrum is a fundamental property, implying that natural scenes are scale-invariant fractal patterns: zooming or changing viewing distance does not affect their spectral composition.

Based on the 1/f spatial frequency spectrum of natural scenes, one could say that high spatial frequencies are relatively unlikely to occur. It seems reasonable to define the objective spatial frequency prior using a 1/f function: prior probability and spatial frequency are inversely related. This prior favours low spatial frequencies.  Hence, a Bayesian observer model incorporating a 1/f prior predicts a perceptual bias towards low spatial frequencies (i.e., large spatial scales) as stimulus visibility is reduced. I measured perceived grating spatial frequency as a function of grating contrast (which is comparable to Stocker & Simoncelli measuring temporal frequency as a function of grating contrast). However, I did not find a bias towards low spatial frequencies as grating contrast is reduced. Instead, perceived spatial frequency is strongly biased towards high spatial frequencies at low contrasts. Assuming human observers are Bayesian, they are using a subjective prior favouring high spatial frequencies although these frequencies are objectively a-priori unlikely. It should be noted that spatial frequency tuning of early visual areas is contrast-independent because of contrast gain control and normalisation (the goal of these mechanisms is to avoid perceptual effects of contrast).

A lot of work has been done focussing on the adaptation of the visual system to the 1/f structure of natural scenes. A 1/f spatial frequency spectrum implies spatial correlations in the image and, consequently, redundancy in second-order statistics as the luminance value of a specific pixel can be predicted based on the luminance value of neighbouring pixels. According to the efficient coding hypothesis, early stages of the visual system have evolved to remove such higher-order redundancy in order to obtain a sparse code, representing a given natural image using a minimal number of independently-active neurons. In this context, it has been suggested that the early visual system amplifies high spatial frequencies in order to "whiten" the average response to 1/f images. Our measured subjective prior could reflect the effects of this high spatial frequency amplification.

Topics/issues/questions to discuss:

  • Can simplicity be related to efficient coding (redundancy reduction, minimum energy consumption and spare coding) ?
  • If so, likelihood vs. simplicity frameworks might generate different predictions in the context of this paradigm. Bayesian models predict a perceptual bias to stimuli that occur frequently in the world. The simplicity framework may predict the opposite under some circumstances.
  • Attempts have been made to obtain objective or semi-objective priors in other stimulus domains such as curvature (cf. Geisler). An interesting question is whether perceptual biases can be found on these dimensions. For instance, does a curved line look straighter when presented at low contrast?
  • Is the proposed 1/f spatial frequency prior an objective prior? Can we obtain similar well-defined and measurable priors for mid-level and high-level vision?

 

 


 
 

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woensdag 25 januari 2012

Conference: Predicting Perceptions

"Welcome to the website for Predicting Perceptions: the 3rd
International Conference on Appearance. It follows on from the highly
successful cross-disciplinary conferences in Ghent and Paris that
attracted 120 and 150 participants from a wide variety of backgrounds.

This year we aim to broaden the scope of the conference:

a) to include measurement and prediction of perceptions derived from
all sensing modalities (not just sight)

b) to widen the range of 'perceptions' considered from the
established properties of colour, gloss, texture, and translucency to
include more emotive considerations such as engagement, perceived
worth and quality; and

c) to emphasise that, due to the increasing role played by the
Digital Economy, digital media is an important stimuli in its own
right.

We very much hope you will enjoy the conference in Easter 2012.

Best wishes
Mike Chantler, Julie Harris and Mike Pointer
"

http://www.perceptions.macs.hw.ac.uk/?page_id=9

vrijdag 20 januari 2012

Science Data Sharing Site figshare Relaunches, Adds Features

Might be a nice place to share stuff.

 
 

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per TechCrunch autorius Scott Merrill 12.1.17

figshare logo

figshare, originally launched in January 2011, is re-launching today with some new features. figshare aims to be a repository for scientific figures, raw datasets, videos and more. The retooled service offers AWS storage, version control, and unlimited public storage capacity. All uploaded data is made available with easy-to-use citation links (and a QR code) and is licensed under CreativeCommons terms to encourage re-use. In addition to faster uploads and an easier-to-navigate interface, figshare is also working on desktop clients.

According to their FAQ, "We are a data sharing platform where you can add figures that might otherwise go unpublished – complete with the raw data tables." All data is organized by categorgy and tags and is readily searchable, making it easy for researchers to find the data they need. Visitors can comment on the works, too.

One of the goals of figshare is to get researchers to share even negative results from their works, in order to reduce duplication of effort, as well as to encourage citations. Publicly available data leads to more citations. According to figshare, unless "we as scientists publish all of our data, we will never achieve access to the sum of all scientific knowledge." By sharing unpublished negative results, researchers can accrue citations for their efforts from other researchers who build upon the work.

You can also follow figshare on Twitter, if that's your thing.



 
 

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woensdag 18 januari 2012

Call for participation: Scottish Vision Group Conference

http://svg.psy.gla.ac.uk/

Conference Date: March 23-25, 2012

Deadline for abstracts/registration: Feb 20th, 2012

The 11th meeting of the Scottish Vision group will be held in
Douneside House, close to the village Tarland in the picturesque
Deeside area of the Scottish Highlands. For more information on the
conference venue and the surrounding area, please visit
http://www.dounesidehouse.co.uk/

Scottish Vision Group holds a three-day (Fri afternoon - Sun
lunchtime) conference that attracts vision scientists from Scotland,
the UK and beyond. Our aim is to provide an intimate setting for a
small group to share scientific ideas and results. The invited speaker
for this year's conference will be Dr Hannah Smithson (University of
Oxford) and her talk is entitled "Colour now and then: Time-dependent
transformations of colour appearance". Friday will be devoted to the
invited talk, preceded by a round table on colour vision, while the
following days will contain a series of talk sessions on various
research topics in vision science. The abstracts from the meeting will
be published in iPerception.

The cost of the conference will depend on whether you are staying in a
single room or sharing. Based on bed, breakfast, lunch and dinner,
for 2 days, we expect the cost to be 191.25 pounds per person (single
room) and 175.78 pounds per person (twin room). This year's meeting is
kindly supported by SR Research and Principal's fund of the University
of Aberdeen.

If you would like to participate, please email your abstract to Amelia
Hunt and Jasna Martinovic, this year's conference organisers, at
scottish.vision.group.2012@gmail.comThis e-mail address is being
protected from spambots. You need JavaScript enabled to view it by
20.2.2012.

Please include the following details in your email:
(1) list of authors
(2) presentation title (or indicate 'non' if you do not want to present)
(3) student or not (we will try to offer a small student discount)
(4) shared or single room
(5) if you're asking for a shared room, please say who you would like
to share with

We look forward to seeing you in Scotland!

Conference announcement: Optimizing performance in dynamic environments

http://www3.fbw.vu.nl/~EBrenner/codde.html

Organizers: Eli Brenner and Rob van Beers

Where: Faculty of Human Movement Sciences of the VU University Amsterdam.

When: From noon on Monday the 2nd of July until the early afternoon on
Thursday the 5th of July 2012.

What: The meeting will be about optimizing performance in dynamic
environments. It will examine how various kinds of information
acquired at various moments are combined for making appropriate
decisions. The decisions in question are decisions that underlie
behaviour such as goal-directed eye and arm movements and movements of
the whole body. The meeting will consider both sensory and motor
issues in human performance, and will include behavioural and brain
imaging studies as well as computational modelling.

Speakers will include:

Gustavo Deco
Jörn Diedrichsen
Benoni Edin
Marc Ernst
Karl Gegenfurtner
Vassilia Hatzitaki
Michael Herzog
Pascal Mamassian
Guillaume Masson
Anna Montagnini
Michele Rucci
Jeroen Smeets
Andy Smith
Andrew Welchman

There will also be talks and posters by other participants, including
post-docs and PhD students.

This will be the final meeting of an EU training project (CODDE), but
there will also be place for about 50 participants from outside the
project.

If you are interested in taking part please let us know. There is no
registration fee, but the space is limited (deadline 1 April or when
the maximal number of people who will fit in the lecture hall is
exceeded).

donderdag 12 januari 2012

Students Find Multiple-Choice Tests Fun and Rewarding with Gamification

An example how making tests fun and rewarding (with virtual badges, not anything else) can lead to undergrad students voluntarily opting-in (!) for boring multiple-choice tests.

 
 

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per NeoAcademic autorius Richard N. Landers 12.1.12

ResearchBlogging.orgIn a recent study by Landers and Callan[1], undergraduates completed optional multiple-choice tests online and reported them, on average, as "fun", "enjoyable", and "rewarding". They did this in the context of an online social network platform previously covered on this blog.  Students were awarded badges (social rewards) in exchange for completing optional practice tests theorized to improve their learning.

This is, to my knowledge, the first published empirical study of gamification in educational settings.

Landers and Callan posit that gamification can be best expressed as an extension of goal setting theory.  By making explicit goals and recognizing their achievement, we can motivate people to action.  Gamification, in this sense, is the recognition of goals electronically and automatically, without the need for a human mediator (most often an instructor in an educational context or a supervisor in an organizational context).  This makes the reward for goal achievement more immediate than is possible with traditional methods and thus more motivating.  Goal setting is well established as a motivational intervention in a wide variety of contexts, so we would expect gamification to be similarly versatile – and perhaps even more powerful.

What's especially interesting about this study (if I do say so myself) is that the authors managed to make the completion of optional multiple choice tests a valid student goal.  Most of the time, grades on tests are themselves a performance goal for students.  But if you ask them to complete practice tests on their own time, you are often met with varying levels of resistance – or simple apathy.  With gamification, about 30% of students enrolled in the social network platform opted to take these tests for no reward other than a virtual badge.  I expect you'd see similar success with an organizational training intervention (upcoming research!).

So why should we get students to complete optional multiple choice tests?  Because other research suggests that the act of testing promotes long term retention of knowledge better than studying does.  Not only do they get a badge, but they learn material for their courses more effectively than they could do on their own!  I consider that a win-win.

Footnotes:
  1. Landers, R. N., & Callan, R. C. (2011). Casual social games as serious games: The psychology of gamification in undergraduate education and employee training. In M. Ma, A. Oikonomou, & L. C. Jain (Eds.), Serious Games and Edutainment Applications (pp. 399-423).  Surrey, UK: Springer. DOI: 10.1007/978-1-4471-2161-9_20

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maandag 9 januari 2012

Top-down modulation: bridging selective attention and working memory

 

Feed: TRENDS IN COGNITIVE SCIENCES
Posted on: donderdag 29 december 2011 1:00
Author: TRENDS IN COGNITIVE SCIENCES
Subject: Top-down modulation: bridging selective attention and working memory

 

Adam Gazzaley, Anna C. Nobre. Selective attention, the ability to focus our cognitive resources on information relevant to our goals, influences working memory (WM) performance. Indeed, attention and working memory are increas....


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Sugegsted by Maarten

Feature-based attention spreads preferentially in an object-specific manner

Publication year: 2011
Source: Vision Research, Available online 29 December 2011
Yariv Festman, Jochen Braun
We studied the spreading of feature-based attention from attended to ignored motion fields (linear, circular, and combinations).
When observers attended one of two superimposed motion fields on one side of the visual midline, sub-threshold priming by an ignored motion field was altered significantly on the opposite side of the midline. This attentional spreading was observed only when attended and ignored motion fields conformed to a complex global flow, not when they shared the same linear motion. These findings corroborate an earlier study (Festman, Braun, 2010, Attention, Perception & Psychophysics), which obtained similar results with a complementary methodology. We conclude that feature-based attention is more complex than hitherto appreciated in that it spreads preferentially in an object-specific manner.

Highlights

We studied the spreading of feature-based attention throughout the visual fields. Observers attended one of two superimposed motion fields displayed on one side. While, a subthreshold priming was presented concurrently on the other, ignored, side. Attentional spreading occurred when the two fields conformed to a complex global flow. This suggests that object factors shape the distribution of feature-based attention.


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Suggested by Maarten